Transcript: lnc-C20orf196-6:3

Basic information

LNCipedia transcript ID: lnc-C20orf196-6:3 
LNCipedia gene ID: lnc-C20orf196-6
Ensembl Gene ID: ENSG00000230563
Ensembl Transcript ID: ENST00000456714
Location (hg38): chr20:5472707-5473975
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 470 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000456714.1; RP5-828H9.1-002; OTTHUMT00000077865.1; NONHSAT078337
Alternative gene names: ENSG00000230563.2; RP5-828H9.1; OTTHUMG00000031804.1; AL121757.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.842 non-coding 
CPAT coding probability 41.96% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-C20orf196-6:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDS2-1:2
4.0 lnc-C20orf196-6:3
4.1 lnc-C20orf196-6:3
5.0 lnc-C20orf196-6:3
5.1 lnc-PANK2-21:3
5.2 lnc-C20orf196-6:3