Transcript: lnc-C21orf62-5:1

Basic information

LNCipedia transcript ID: lnc-C21orf62-5:1 
LNCipedia gene ID: lnc-C21orf62-5
Ensembl Gene ID: ENSG00000227757
Ensembl Transcript ID: ENST00000454622
Location (hg38): chr21:32913649-33071104
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 682 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420356.1; AP000282.2-002; OTTHUMT00000315806.1; ENST00000454622.1; AP000282.2-001; OTTHUMT00000139664.1; NONHSAT081756; ENST00000454622.2
Alternative gene names: ENSG00000227757.1; AP000282.2; OTTHUMG00000065033.2; ENSG00000227757.3; AP000282.1

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -117.9121 non-coding 
CPAT coding probability 1.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C21orf62-5:1 no no no no

Available literature

  1. Yang (2015), Microarray profiling of long non-coding RNA (lncRNA) associated with hypertrophic cardiomyopathy., BMC Cardiovasc Disord

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C21orf54-4:1
4.0 lnc-C21orf54-4:1
4.1 lnc-C21orf54-4:1
5.0 lnc-C21orf54-4:1
5.1 lnc-TMEM50B-10:1
5.2 lnc-C21orf62-5:1