Transcript: lnc-C2CD2-1:1

Basic information

LNCipedia transcript ID: lnc-C2CD2-1:1 
LNCipedia gene ID: lnc-C2CD2-1
Ensembl Gene ID: ENSG00000227698
Ensembl Transcript ID: ENST00000432411
Location (hg38): chr21:41874756-41877613
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 447 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000432411.1; AP001619.2-001; OTTHUMT00000195230.1; NONHSAT082294
Alternative gene names: ENSG00000227698.1; AP001619.2; OTTHUMG00000086780.1; AP001619.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.3285 non-coding 
CPAT coding probability 4.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C2CD2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C2CD2-1:1
4.0 lnc-C2CD2-1:1
4.1 lnc-C2CD2-1:1
5.0 lnc-C2CD2-1:1
5.1 lnc-POFUT2-69:1
5.2 lnc-C2CD2-1:1