Transcript: lnc-C2CD4A-8:1

Basic information

LNCipedia transcript ID: lnc-C2CD4A-8:1 
LNCipedia gene ID: lnc-C2CD4A-8
Ensembl Gene ID: ENSG00000259481
Ensembl Transcript ID: ENST00000560876
Location (hg38): chr15:61181249-61195938
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 476 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560876.1; RP11-39M21.1-001; OTTHUMT00000416858.1; NONHSAT044242
Alternative gene names: ENSG00000259481.1; RP11-39M21.1; OTTHUMG00000172108.1; AC012404.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -46.6334 non-coding 
CPAT coding probability 8.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C2CD4A-8:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C2CD4A-8:1
4.0 lnc-C2CD4A-8:1
4.1 lnc-C2CD4A-8:1
5.0 lnc-C2CD4A-8:1
5.1 lnc-MAP2K1-78:1
5.2 lnc-C2CD4A-8:1