Transcript: lnc-C2CD5-3:7

Basic information

LNCipedia transcript ID: lnc-C2CD5-3:7 
LNCipedia gene ID: lnc-C2CD5-3
Ensembl Gene ID: ENSG00000257023
Ensembl Transcript ID: ENST00000542076
Location (hg38): chr12:22609228-22625015
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 862 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000542076.1; RP11-268P4.4-001; OTTHUMT00000402052.1; NONHSAT027285
Alternative gene names: ENSG00000257023.1; RP11-268P4.4; OTTHUMG00000169039.1; AC087241.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.8632 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C2CD5-3:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0528-3:1
4.0 lnc-KIAA0528-3:1
4.1 lnc-KIAA0528-3:1
5.0 lnc-KIAA0528-3:1
5.1 lnc-WBP11-65:7
5.2 lnc-C2CD5-3:7