Transcript: lnc-C2orf40-16:3

Basic information

LNCipedia transcript ID: lnc-C2orf40-16:3 
LNCipedia gene ID: lnc-C2orf40-16
Location (hg38): chr2:106194568-106197454
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2741 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000044067.1|ENCT00000227899.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.0317 non-coding 
CPAT coding probability 7.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C2orf40-16:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C2orf40-16:3
5.0 lnc-C2orf40-16:3
5.1 lnc-SULT1C2-23:3
5.2 lnc-C2orf40-16:3