Transcript: lnc-C2orf49-1:1

Basic information

LNCipedia transcript ID: lnc-C2orf49-1:1 
LNCipedia gene ID: lnc-C2orf49-1
Ensembl Gene ID: ENSG00000235319
Ensembl Transcript ID: ENST00000433219
Location (hg38): chr2:105324210-105330529
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 674 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000433219; ENST00000433219.1; AC012360.4-001; OTTHUMT00000329578.1; NONHSAT072981
Alternative gene names: ENSG00000235319; AC012360.4; ENSG00000235319.1; OTTHUMG00000153107.1; AC012360.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.4196 non-coding 
CPAT coding probability 2.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C2orf49-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C2orf49-1:1
3.1 lnc-C2orf49-1:1
4.0 lnc-C2orf49-1:1
4.1 lnc-C2orf49-1:1
5.0 lnc-C2orf49-1:1
5.1 lnc-SLC9A4-64:1
5.2 lnc-C2orf49-1:1