Transcript: lnc-C2orf49-2:2

Basic information

LNCipedia transcript ID: lnc-C2orf49-2:2 
LNCipedia gene ID: lnc-C2orf49-2
Location (hg38): chr2:105375866-105378841
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2008 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000457290; ENST00000457290.1; AC012360.6-001; OTTHUMT00000329580.1; NONHSAT072989
Alternative gene names: ENSG00000238273; AC012360.6; ENSG00000238273.2; OTTHUMG00000153109.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.4922 non-coding 
CPAT coding probability 2.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C2orf49-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C2orf49-2:2
3.1 lnc-C2orf49-2:2
4.0 lnc-C2orf49-2:2
4.1 lnc-C2orf49-2:2
5.0 lnc-C2orf49-2:2
5.1 lnc-SLC9A4-65:4
5.2 lnc-C2orf49-2:2