Transcript: lnc-C2orf54-1:1

Basic information

LNCipedia transcript ID: lnc-C2orf54-1:1 
LNCipedia gene ID: lnc-C2orf54-1
Ensembl Gene ID: ENSG00000233392
Ensembl Transcript ID: ENST00000418218
RefSeq ID: NR_033841
Location (hg38): chr2:240954617-240967451
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2274 bp
Exons: 9
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000418218.1; AC104809.4-002; OTTHUMT00000324351.1; NONHSAT077867; ENST00000418218.5; NR_033841.1
Alternative gene names: ENSG00000233392.1; AC104809.4; OTTHUMG00000151847.3; ENSG00000233392.5; AC104809.2; LOC200772


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.0637 non-coding 
CPAT coding probability 33.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C2orf54-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C2orf54-1:1
4.0 lnc-C2orf54-1:1
4.1 lnc-C2orf54-1:1
5.0 lnc-C2orf54-1:1
5.1 lnc-STK25-20:2
5.2 lnc-C2orf54-1:1