Transcript: lnc-C2orf54-1:2

Basic information

LNCipedia transcript ID: lnc-C2orf54-1:2 
LNCipedia gene ID: lnc-C2orf54-1
Location (hg38): chr2:240954621-240967451
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2270 bp
Exons: 9
Sources: Broad Institute
Alternative transcript names: TCONS_00002682
Alternative gene names: XLOC_002548; linc-C2orf54-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.0637 non-coding 
CPAT coding probability 33.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C2orf54-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C2orf54-1:1
3.1 lnc-C2orf54-1:2
4.0 lnc-C2orf54-1:2
4.1 lnc-C2orf54-1:2
5.0 lnc-C2orf54-1:2
5.1 lnc-STK25-20:1
5.2 lnc-C2orf54-1:2