Transcript: lnc-C4orf46-1:1

Basic information

LNCipedia transcript ID: lnc-C4orf46-1:1 
LNCipedia gene ID: lnc-C4orf46-1
Ensembl Gene ID: ENSG00000249901
Ensembl Transcript ID: ENST00000502566
Location (hg38): chr4:158490766-158509908
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 659 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007889; ENST00000502566.1; RP11-781M16.2-001; OTTHUMT00000365721.1; NONHSAT098997
Alternative gene names: XLOC_004138; linc-FAM198B-1; ENSG00000249901.1; RP11-781M16.2; OTTHUMG00000161685.1; AC121161.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.0037 non-coding 
CPAT coding probability 1.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C4orf46-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C4orf46-1:1
3.1 lnc-C4orf46-1:1
4.0 lnc-C4orf46-1:1
4.1 lnc-C4orf46-1:1
5.0 lnc-C4orf46-1:1
5.1 lnc-C4orf46-5:1
5.2 lnc-C4orf46-1:1