Transcript: lnc-C5orf47-2:1

Basic information

LNCipedia transcript ID: lnc-C5orf47-2:1 
LNCipedia gene ID: lnc-C5orf47-2
Location (hg38): chr5:174237894-174243276
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 999 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010182; NONHSAT105235
Alternative gene names: XLOC_004645; linc-MSX2-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.489 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C5orf47-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C5orf47-1:1
3.1 lnc-C5orf47-2:1
4.0 lnc-C5orf47-2:1
4.1 lnc-C5orf47-2:1
5.0 lnc-C5orf47-2:1
5.1 lnc-ATP6V0E1-42:1
5.2 lnc-C5orf47-2:1