Transcript: lnc-C5orf49-1:1

Basic information

LNCipedia transcript ID: lnc-C5orf49-1:1 
LNCipedia gene ID: lnc-C5orf49-1
Location (hg38): chr5:7707802-7749765
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 521 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000514105.1; RP11-711G10.1-001; OTTHUMT00000366310.1
Alternative gene names: ENSG00000250761.1; RP11-711G10.1; OTTHUMG00000161894.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.3058 non-coding 
CPAT coding probability 13.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C5orf49-1:1 yes no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C5orf49-1:1
4.0 lnc-C5orf49-1:1
4.1 lnc-C5orf49-1:1
5.0 lnc-C5orf49-1:1
5.1 lnc-IRX2-84:2
5.2 lnc-C5orf49-1:1