Transcript: lnc-C5orf58-1:1

Basic information

LNCipedia transcript ID: lnc-C5orf58-1:1 
LNCipedia gene ID: lnc-C5orf58-1
Ensembl Gene ID: ENSG00000253647
Ensembl Transcript ID: ENST00000518387
RefSeq ID: NR_109899
Location (hg38): chr5:170389493-170422844
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1215 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000518387.1; CTD-2270F17.1-001; OTTHUMT00000371849.1; NONHSAT105053; NR_109899; NR_109899.1
Alternative gene names: ENSG00000253647.1; CTD-2270F17.1; OTTHUMG00000163147.1; AC027306.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.4921 non-coding 
CPAT coding probability 7.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C5orf58-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C5orf58-1:1
4.0 lnc-C5orf58-1:1
4.1 lnc-C5orf58-1:1
5.0 lnc-C5orf58-1:1
5.1 lnc-ATP6V0E1-83:4
5.2 lnc-C5orf58-1:1