Transcript: lnc-C6orf118-12:1

Basic information

LNCipedia transcript ID: lnc-C6orf118-12:1 
LNCipedia gene ID: lnc-C6orf118-12
Ensembl Gene ID: ENSG00000260422
Ensembl Transcript ID: ENST00000564697
Location (hg38): chr6:164084023-164085661
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1639 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564697.1; RP1-155D22.2-001; OTTHUMT00000431301.1; NONHSAT115981
Alternative gene names: ENSG00000260422.1; RP1-155D22.2; OTTHUMG00000175946.1; Z97205.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.2404 non-coding 
CPAT coding probability 4.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C6orf118-12:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL078585.1-6:1
4.0 lnc-AL078585.1-6:1
4.1 lnc-AL078585.1-6:1
5.0 lnc-AL078585.1-6:1
5.1 lnc-PRKN-6:1
5.2 lnc-C6orf118-12:1