Transcript: lnc-C6orf120-1:1

Basic information

LNCipedia transcript ID: lnc-C6orf120-1:1 
LNCipedia gene ID: lnc-C6orf120-1
Ensembl Gene ID: ENSG00000226445
Ensembl Transcript ID: ENST00000444188
Location (hg38): chr6:169213254-169239565
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 980 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000444188.1; XXyac-YX65C7_A.2-001; OTTHUMT00000105435.1; NONHSAT116188
Alternative gene names: ENSG00000226445.1; XXyac-YX65C7_A.2; OTTHUMG00000045405.1; BX322234.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.4604 non-coding 
CPAT coding probability 1.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C6orf120-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C6orf120-1:1
4.0 lnc-C6orf120-1:1
4.1 lnc-C6orf120-1:1
5.0 lnc-C6orf120-1:1
5.1 lnc-SYTL3-116:7
5.2 lnc-C6orf120-1:1