Transcript: lnc-C6orf141-1:2

Basic information

LNCipedia transcript ID: lnc-C6orf141-1:2 
LNCipedia gene ID: lnc-C6orf141-1
Location (hg38): chr6:49817430-49820442
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 381 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000437859.1; RP3-417L20.4-001; OTTHUMT00000040874.1; NONHSAT147412
Alternative gene names: ENSG00000235122.2; RP3-417L20.4; OTTHUMG00000014826.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.065 non-coding 
CPAT coding probability 1.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C6orf141-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C6orf141-1:2
4.0 lnc-C6orf141-1:2
4.1 lnc-C6orf141-1:2
5.0 lnc-C6orf141-1:2
5.1 lnc-EFHC1-32:3
5.2 lnc-C6orf141-1:2