Transcript: lnc-C8A-3:1

Basic information

LNCipedia transcript ID: lnc-C8A-3:1 
LNCipedia gene ID: lnc-C8A-3
Ensembl Gene ID: ENSG00000227935
Ensembl Transcript ID: ENST00000422038
Location (hg38): chr1:57386576-57387450
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 708 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422038; ENST00000422038.1; RP6-102O10.1-001; OTTHUMT00000027966.1; NONHSAT003476
Alternative gene names: ENSG00000227935; RP6-102O10.1; ENSG00000227935.1; OTTHUMG00000010108.1; AL390243.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.9674 non-coding 
CPAT coding probability 5.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C8A-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C8A-1:1
3.1 lnc-C8A-3:1
4.0 lnc-C8A-3:1
4.1 lnc-C8A-3:1
5.0 lnc-C8A-3:1
5.1 lnc-MROH7-TTC4-22:1
5.2 lnc-C8A-3:1