Transcript: lnc-C8A-6:1

Basic information

LNCipedia transcript ID: lnc-C8A-6:1 
LNCipedia gene ID: lnc-C8A-6
Ensembl Gene ID: ENSG00000235038
Ensembl Transcript ID: ENST00000419596
Location (hg38): chr1:58060139-58080274
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 620 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419596; ENST00000419596.1; RP11-393I23.4-001; OTTHUMT00000027965.1; NONHSAT003501
Alternative gene names: ENSG00000235038; RP11-393I23.4; ENSG00000235038.1; OTTHUMG00000010107.1; AL445193.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.9657 non-coding 
CPAT coding probability 3.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C8A-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C8A-4:1
3.1 lnc-C8A-6:1
4.0 lnc-C8A-6:1
4.1 lnc-C8A-6:1
5.0 lnc-C8A-6:1
5.1 lnc-MROH7-TTC4-26:1
5.2 lnc-C8A-6:1