Transcript: lnc-C8orf48-1:5

Basic information

LNCipedia transcript ID: lnc-C8orf48-1:5 
LNCipedia gene ID: lnc-C8orf48-1
Location (hg38): chr8:13629653-13637591
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1157 bp
Exons: 4
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT125206; FPKM1_group_30933_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.5375 non-coding 
CPAT coding probability 2.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C8orf48-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C8orf48-1:5
4.0 lnc-C8orf48-1:5
4.1 lnc-C8orf48-1:5
5.0 lnc-C8orf48-1:5
5.1 lnc-PCM1-38:1
5.2 lnc-C8orf48-1:5