Transcript: lnc-C8orf59-1:3

Basic information

LNCipedia transcript ID: lnc-C8orf59-1:3 
LNCipedia gene ID: lnc-C8orf59-1
Ensembl Gene ID: ENSG00000258256
Ensembl Transcript ID: ENST00000546501
Location (hg38): chr8:85222446-85229016
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 589 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000546501.1
Alternative gene names: ENSG00000258256.1; RP11-219B4.5; AC011773.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -51.2223 non-coding 
CPAT coding probability 7.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C8orf59-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-219B4.5.1-1:2
4.1 lnc-RP11-219B4.5.1-1:2
5.0 lnc-RP11-219B4.5.1-1:2
5.1 lnc-ZNF706-244:2
5.2 lnc-C8orf59-1:3