Transcript: lnc-C8orf74-1:1

Basic information

LNCipedia transcript ID: lnc-C8orf74-1:1 
LNCipedia gene ID: lnc-C8orf74-1
Ensembl Gene ID: ENSG00000248896
Ensembl Transcript ID: ENST00000506149
Location (hg38): chr8:10729314-10764723
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 821 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506149; ENST00000506149.2; CTD-2135J3.3-002; OTTHUMT00000375782.1; NONHSAT147617
Alternative gene names: ENSG00000248896; CTD-2135J3.3; ENSG00000248896.2; OTTHUMG00000163821.1; AC105001.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.2446 non-coding 
CPAT coding probability 2.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C8orf74-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C8orf74-1:1
3.1 lnc-C8orf74-1:1
4.0 lnc-C8orf74-1:1
4.1 lnc-C8orf74-1:1
5.0 lnc-C8orf74-1:1
5.1 lnc-DEFB106A-55:1
5.2 lnc-C8orf74-1:1