Transcript: lnc-C8orf89-7:1

Basic information

LNCipedia transcript ID: lnc-C8orf89-7:1 
LNCipedia gene ID: lnc-C8orf89-7
Ensembl Gene ID: ENSG00000237061
Ensembl Transcript ID: ENST00000442274
Location (hg38): chr8:73083787-73085879
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 480 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000442274.1; RP11-956J14.1-001; OTTHUMT00000347583.1; NONHSAT127232
Alternative gene names: ENSG00000237061.1; RP11-956J14.1; OTTHUMG00000157143.1; AC100823.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -229.3146 non-coding 
CPAT coding probability 7.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C8orf89-7:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPL7-2:1
4.0 lnc-RPL7-7:1
4.1 lnc-RPL7-7:1
5.0 lnc-RPL7-7:1
5.1 lnc-CPA6-91:1
5.2 lnc-C8orf89-7:1