Transcript: lnc-C9orf116-4:1

Basic information

LNCipedia transcript ID: lnc-C9orf116-4:1 
LNCipedia gene ID: lnc-C9orf116-4
Ensembl Gene ID: ENSG00000227958
Ensembl Transcript ID: ENST00000452377
Location (hg38): chr9:135204722-135237597
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 527 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015893; ENST00000452377; ENST00000452377.1; RP11-399H11.3-001; OTTHUMT00000054979.1; NONHSAT135433
Alternative gene names: XLOC_007888; linc-FCN1-2; ENSG00000227958; RP11-399H11.3; ENSG00000227958.1; OTTHUMG00000020899.1; AL390778.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.2968 non-coding 
CPAT coding probability 3.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C9orf116-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf116-3:1
3.1 lnc-C9orf116-4:1
4.0 lnc-C9orf116-4:1
4.1 lnc-C9orf116-4:1
5.0 lnc-C9orf116-4:1
5.1 lnc-CAMSAP1-15:1
5.2 lnc-C9orf116-4:1