Transcript: lnc-C9orf50-4:11

Basic information

LNCipedia transcript ID: lnc-C9orf50-4:11 
LNCipedia gene ID: lnc-C9orf50-4
Ensembl Gene ID: ENSG00000261334
Ensembl Transcript ID: ENST00000565882
Location (hg38): chr9:129480605-129482538
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1934 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565882.1; RP11-65J3.14-001; OTTHUMT00000430763.1; NONHSAT135069
Alternative gene names: ENSG00000261334.1; RP11-65J3.14; OTTHUMG00000175667.1; AL353803.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.5038 non-coding 
CPAT coding probability 4.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C9orf50-4:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf50-3:1
4.0 lnc-C9orf50-3:1
4.1 lnc-C9orf50-4:11
5.0 lnc-C9orf50-4:11
5.1 lnc-SPOUT1-27:7
5.2 lnc-C9orf50-4:11