Transcript: lnc-C9orf50-4:2

Basic information

LNCipedia transcript ID: lnc-C9orf50-4:2 
LNCipedia gene ID: lnc-C9orf50-4
Location (hg38): chr9:129446657-129451321
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 441 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00016490; NONHSAT135067
Alternative gene names: XLOC_007867; linc-IER5L-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -115.3712 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C9orf50-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf50-3:2
3.1 lnc-C9orf50-4:2
4.0 lnc-C9orf50-4:2
4.1 lnc-C9orf50-4:2
5.0 lnc-C9orf50-4:2
5.1 lnc-SPOUT1-27:9
5.2 lnc-C9orf50-4:2