Transcript: lnc-C9orf50-4:3

Basic information

LNCipedia transcript ID: lnc-C9orf50-4:3 
LNCipedia gene ID: lnc-C9orf50-4
Ensembl Gene ID: ENSG00000230676
Ensembl Transcript ID: ENST00000436510
Location (hg38): chr9:129430652-129447290
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1846 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015888; ENST00000436510; ENST00000436510.1; RP11-65J3.3-002; OTTHUMT00000315870.1; NONHSAT135062
Alternative gene names: XLOC_007867; linc-IER5L-4; ENSG00000230676; RP11-65J3.3; ENSG00000230676.1; OTTHUMG00000020780.3; AL353803.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.2022 non-coding 
CPAT coding probability 19.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C9orf50-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf50-3:3
3.1 lnc-C9orf50-4:3
4.0 lnc-C9orf50-4:3
4.1 lnc-C9orf50-4:3
5.0 lnc-C9orf50-4:3
5.1 lnc-SPOUT1-27:10
5.2 lnc-C9orf50-4:3