Transcript: lnc-C9orf66-15:17

Basic information

LNCipedia transcript ID: lnc-C9orf66-15:17 
LNCipedia gene ID: lnc-C9orf66-15
Ensembl Gene ID: ENSG00000227155
Ensembl Transcript ID: ENST00000588989
Location (hg38): chr9:457004-467219
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 835 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000588989.1
Alternative gene names: ENSG00000227155.3; RP11-165F24.3; ENSG00000227155.7; AL161725.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.0469 non-coding 
CPAT coding probability 6.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C9orf66-15:17 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf66-2:11
4.0 lnc-C9orf66-2:11
4.1 lnc-C9orf66-2:11
5.0 lnc-C9orf66-2:11
5.1 lnc-CER1-100:17
5.2 lnc-C9orf66-15:17