Transcript: lnc-CA10-2:1

Basic information

LNCipedia transcript ID: lnc-CA10-2:1 
LNCipedia gene ID: lnc-CA10-2
Location (hg38): chr17:52804350-52813536
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1434 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_1468_chr17:50881709-50890896_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.2352 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CA10-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CA10-2:1
4.0 lnc-CA10-2:1
4.1 lnc-CA10-2:1
5.0 lnc-CA10-2:1
5.1 lnc-ANKRD40-20:1
5.2 lnc-CA10-2:1