Transcript: lnc-CA4-3:1

Basic information

LNCipedia transcript ID: lnc-CA4-3:1 
LNCipedia gene ID: lnc-CA4-3
Ensembl Gene ID: ENSG00000267416
Ensembl Transcript ID: ENST00000589740
RefSeq ID: NR_135648
Location (hg38): chr17:60079309-60088695
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 699 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT055059; ENST00000589740.1; NR_135648.1
Alternative gene names: ENSG00000267416.1; CTD-2319I12.2; AC025048.4; LOC105371849


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.9343 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CA4-3:1 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CA4-3:1
4.0 lnc-CA4-3:1
4.1 lnc-CA4-3:1
5.0 lnc-CA4-3:1
5.1 lnc-VMP1-13:7
5.2 lnc-CA4-3:1