Transcript: lnc-CA4-3:4

Basic information

LNCipedia transcript ID: lnc-CA4-3:4 
LNCipedia gene ID: lnc-CA4-3
Location (hg38): chr17:60078974-60084067
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4746 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000267416.1|HBMT00000606402.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 14.2386 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CA4-3:4 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CA4-3:4
5.0 lnc-CA4-3:4
5.1 lnc-VMP1-13:3
5.2 lnc-CA4-3:4