Transcript: lnc-CA5A-2:1

Basic information

LNCipedia transcript ID: lnc-CA5A-2:1 
LNCipedia gene ID: lnc-CA5A-2
Ensembl Gene ID: ENSG00000205037
Ensembl Transcript ID: ENST00000566351
RefSeq ID: NR_120310
Location (hg38): chr16:88099409-88100985
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 414 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000566351.1; RP11-863P13.4-002; OTTHUMT00000430446.1; NONHSAT144352; NR_120310; NR_120310.1
Alternative gene names: ENSG00000205037.2; RP11-863P13.4; OTTHUMG00000175541.1; AC134312.1; LOC400553


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 12.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CA5A-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CA5A-2:1
4.0 lnc-CA5A-2:1
4.1 lnc-CA5A-2:1
5.0 lnc-CA5A-2:1
5.1 lnc-KLHDC4-18:2
5.2 lnc-CA5A-2:1