Transcript: lnc-CA5A-4:1

Basic information

LNCipedia transcript ID: lnc-CA5A-4:1 
LNCipedia gene ID: lnc-CA5A-4
Location (hg38): chr16:88177377-88186744
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2112 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024782; NONHSAT144363
Alternative gene names: XLOC_012057; linc-CA5A-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.918 non-coding 
CPAT coding probability 9.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CA5A-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CA5A-2:1
3.1 lnc-CA5A-4:1
4.0 lnc-CA5A-4:1
4.1 lnc-CA5A-4:1
5.0 lnc-CA5A-4:1
5.1 lnc-KLHDC4-20:1
5.2 lnc-CA5A-4:1