Transcript: lnc-CA5A-5:1

Basic information

LNCipedia transcript ID: lnc-CA5A-5:1 
LNCipedia gene ID: lnc-CA5A-5
Ensembl Gene ID: ENSG00000261816
Ensembl Transcript ID: ENST00000568587
Location (hg38): chr16:88191486-88193667
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 444 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568587.1; RP11-863P13.2-001; OTTHUMT00000430449.1; NONHSAT144374
Alternative gene names: ENSG00000261816.1; RP11-863P13.2; OTTHUMG00000175544.1; AC134312.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.5968 non-coding 
CPAT coding probability 2.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CA5A-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CA5A-5:1
4.0 lnc-CA5A-5:1
4.1 lnc-CA5A-5:1
5.0 lnc-CA5A-5:1
5.1 lnc-KLHDC4-21:1
5.2 lnc-CA5A-5:1