Transcript: lnc-CA6-2:1

Basic information

LNCipedia transcript ID: lnc-CA6-2:1 
LNCipedia gene ID: lnc-CA6-2
Location (hg38): chr1:8805860-8807051
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 353 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000433876; ENST00000433876.1; RP4-633I8.4-001; OTTHUMT00000004952.1; NONHSAT000765
Alternative gene names: ENSG00000228423; RP4-633I8.4; ENSG00000228423.1; OTTHUMG00000001777.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -361.7646 non-coding 
CPAT coding probability 1.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CA6-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CA6-2:1
3.1 lnc-CA6-2:1
4.0 lnc-CA6-2:1
4.1 lnc-CA6-2:1
5.0 lnc-CA6-2:1
5.1 lnc-H6PD-6:1
5.2 lnc-CA6-2:1