Transcript: lnc-CA8-14:3

Basic information

LNCipedia transcript ID: lnc-CA8-14:3 
LNCipedia gene ID: lnc-CA8-14
Ensembl Gene ID: ENSG00000254869
Ensembl Transcript ID: ENST00000529518
Location (hg38): chr8:60652502-60653561
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 430 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000529518; ENST00000529518.1; RP11-91I20.2-001; OTTHUMT00000383466.1; NONHSAT126847
Alternative gene names: ENSG00000254869; RP11-91I20.2; ENSG00000254869.1; OTTHUMG00000165330.1; AC068389.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.2384 non-coding 
CPAT coding probability 12.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CA8-14:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CA8-5:1
3.1 lnc-CA8-6:1
4.0 lnc-CA8-5:7
4.1 lnc-CA8-5:7
5.0 lnc-CA8-5:7
5.1 lnc-IMPAD1-61:3
5.2 lnc-CA8-14:3