Transcript: lnc-CABIN1-1:3

Basic information

LNCipedia transcript ID: lnc-CABIN1-1:3 
LNCipedia gene ID: lnc-CABIN1-1
Ensembl Gene ID: ENSG00000272787
Ensembl Transcript ID: ENST00000609736
Location (hg38): chr22:23969211-23969873
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 663 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609736.1
Alternative gene names: ENSG00000272787.1; KB-226F1.2; AC253536.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.4005 non-coding 
CPAT coding probability 1.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CABIN1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GSTT2-1:1
4.0 lnc-GSTT2-1:1
4.1 lnc-GSTT2-1:1
5.0 lnc-GSTT2-1:1
5.1 lnc-CABIN1-1:2
5.2 lnc-CABIN1-1:3