Transcript: lnc-CACNA1B-1:2

Basic information

LNCipedia transcript ID: lnc-CACNA1B-1:2 
LNCipedia gene ID: lnc-CACNA1B-1
Location (hg38): chr9:138217068-138258850
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1836 bp
Exons: 10
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000446912.1; FAM157B-001; OTTHUMT00000055378.1; NONHSAT135770
Alternative gene names: ENSG00000233013.3; FAM157B; OTTHUMG00000021000.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 125.0856 coding 
CPAT coding probability 60.55% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CACNA1B-1:2 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CACNA1B-1:2
4.0 lnc-CACNA1B-1:2
4.1 lnc-CACNA1B-1:2
5.0 lnc-CACNA1B-1:2
5.1 lnc-GPSM1-78:2
5.2 lnc-CACNA1B-1:2