Transcript: lnc-CACNA1D-3:2

Basic information

LNCipedia transcript ID: lnc-CACNA1D-3:2 
LNCipedia gene ID: lnc-CACNA1D-3
Location (hg38): chr3:53270003-53295611
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 375 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000060207.1|FTMT21100023643.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -216.8726 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CACNA1D-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PRKCD-3:1
5.0 lnc-PRKCD-3:1
5.1 lnc-ITIH1-11:1
5.2 lnc-CACNA1D-3:2