Transcript: lnc-CACNB3-1:2

Basic information

LNCipedia transcript ID: lnc-CACNB3-1:2 
LNCipedia gene ID: lnc-CACNB3-1
Ensembl Gene ID: ENSG00000257660
Ensembl Transcript ID: ENST00000549864
RefSeq ID: NR_110020
Location (hg38): chr12:48789576-48790535
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 473 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000549864; ENST00000549864.1; RP11-579D7.4-002; OTTHUMT00000408870.1; NONHSAT028027; NR_110020; NR_110020.1
Alternative gene names: ENSG00000257660; RP11-579D7.4; ENSG00000257660.1; OTTHUMG00000170397.1; ENSG00000257660.5; AC117498.2; LOC100506125


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.0665 non-coding 
CPAT coding probability 1.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CACNB3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CACNB3-1:2
3.1 lnc-CACNB3-1:2
4.0 lnc-CACNB3-1:2
4.1 lnc-CACNB3-1:2
5.0 lnc-CACNB3-1:2
5.1 lnc-TEX49-3:2
5.2 lnc-CACNB3-1:2