Transcript: lnc-CADM1-1:1

Basic information

LNCipedia transcript ID: lnc-CADM1-1:1 
LNCipedia gene ID: lnc-CADM1-1
Ensembl Gene ID: ENSG00000256281
Ensembl Transcript ID: ENST00000544663
Location (hg38): chr11:115532322-115532953
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 294 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000544663; ENST00000544663.1; RP11-136I14.2-001; OTTHUMT00000398932.1; NONHSAT024309
Alternative gene names: ENSG00000256281; RP11-136I14.2; ENSG00000256281.1; OTTHUMG00000168237.1; AP003174.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.3589 non-coding 
CPAT coding probability 2.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CADM1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CADM1-1:1
3.1 lnc-CADM1-1:1
4.0 lnc-CADM1-1:1
4.1 lnc-CADM1-1:1
5.0 lnc-CADM1-1:1
5.1 lnc-DRD2-37:1
5.2 lnc-CADM1-1:1