Transcript: lnc-CADM1-4:3

Basic information

LNCipedia transcript ID: lnc-CADM1-4:3 
LNCipedia gene ID: lnc-CADM1-4
Location (hg38): chr11:116066910-116080980
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 615 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019770; NONHSAT024335
Alternative gene names: XLOC_009564; linc-CADM1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.3571 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CADM1-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CADM1-4:3
3.1 lnc-CADM1-4:3
4.0 lnc-CADM1-4:3
4.1 lnc-CADM1-4:3
5.0 lnc-CADM1-4:3
5.1 lnc-SCN4B-50:10
5.2 lnc-CADM1-4:3