Transcript: lnc-CAGE1-1:4

Basic information

LNCipedia transcript ID: lnc-CAGE1-1:4 
LNCipedia gene ID: lnc-CAGE1-1
Location (hg38): chr6:7540149-7543095
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1230 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1183:2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -110.1592 non-coding 
CPAT coding probability 4.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CAGE1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CAGE1-1:4
4.1 lnc-CAGE1-1:4
5.0 lnc-CAGE1-1:4
5.1 lnc-ECI2-197:3
5.2 lnc-CAGE1-1:4