Transcript: lnc-CALB2-4:2

Basic information

LNCipedia transcript ID: lnc-CALB2-4:2 
LNCipedia gene ID: lnc-CALB2-4
Ensembl Gene ID: ENSG00000259833
Ensembl Transcript ID: ENST00000568931
Location (hg38): chr16:71080869-71090490
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 586 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568931.1; RP11-23E19.1-002; OTTHUMT00000434703.1; NONHSAT143458
Alternative gene names: ENSG00000259833.1; RP11-23E19.1; OTTHUMG00000177000.1; ENSG00000259833.5; AC138625.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -182.336 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CALB2-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CALB2-4:2
4.0 lnc-CALB2-4:2
4.1 lnc-CALB2-4:2
5.0 lnc-CALB2-4:2
5.1 lnc-CALB2-4:2
5.2 lnc-CALB2-4:2