Transcript: lnc-CALHM3-2:1

Basic information

LNCipedia transcript ID: lnc-CALHM3-2:1 
LNCipedia gene ID: lnc-CALHM3-2
Location (hg38): chr10:103642164-103648347
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4533 bp
Exons: 2
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000502138
Alternative gene names: ENSG00000245012


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.6333 non-coding 
CPAT coding probability 30.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CALHM3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CALHM3-1:1
3.1 lnc-CALHM3-2:1
4.0 lnc-CALHM3-2:1
4.1 lnc-CALHM3-2:1
5.0 lnc-CALHM3-2:1
5.1 lnc-CPN1-101:1
5.2 lnc-CALHM3-2:1