Transcript: lnc-CALM1-4:1

Basic information

LNCipedia transcript ID: lnc-CALM1-4:1 
LNCipedia gene ID: lnc-CALM1-4
Ensembl Gene ID: ENSG00000259163
Ensembl Transcript ID: ENST00000553826
Location (hg38): chr14:90642638-90645135
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 485 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000553826.1; RP11-1078H9.5-002; OTTHUMT00000411413.1; NONHSAT039245
Alternative gene names: ENSG00000259163.1; RP11-1078H9.5; OTTHUMG00000171050.1; AL096869.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.1806 non-coding 
CPAT coding probability 2.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CALM1-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CALM1-4:1
4.0 lnc-CALM1-4:1
4.1 lnc-CALM1-4:1
5.0 lnc-CALM1-4:1
5.1 lnc-SPATA7-30:3
5.2 lnc-CALM1-4:1