Transcript: lnc-CALM1-7:3

Basic information

LNCipedia transcript ID: lnc-CALM1-7:3 
LNCipedia gene ID: lnc-CALM1-7
Location (hg38): chr14:90383422-90388262
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4841 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000019889.1|HBMT00000435245.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -5.9682 non-coding 
CPAT coding probability 1.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CALM1-7:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CALM1-7:3
5.0 lnc-CALM1-7:3
5.1 lnc-SPATA7-25:3
5.2 lnc-CALM1-7:3