Transcript: lnc-CAMSAP2-1:1

Basic information

LNCipedia transcript ID: lnc-CAMSAP2-1:1 
LNCipedia gene ID: lnc-CAMSAP2-1
Ensembl Gene ID: ENSG00000260088
Ensembl Transcript ID: ENST00000568695
RefSeq ID: NR_110787
Location (hg38): chr1:200669507-200694250
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 736 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000568695.1; RP11-92G12.3-001; OTTHUMT00000086957.1; NONHSAT008702; NR_110787; NR_110787.1
Alternative gene names: ENSG00000260088.1; RP11-92G12.3; OTTHUMG00000035741.1; AL445483.1; LOC101929224


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.3116 non-coding 
CPAT coding probability 4.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CAMSAP2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CAMSAP2-1:1
4.0 lnc-CAMSAP2-1:1
4.1 lnc-CAMSAP2-1:1
5.0 lnc-CAMSAP2-1:1
5.1 lnc-ADORA1-71:3
5.2 lnc-CAMSAP2-1:1