Transcript: lnc-CANX-1:10

Basic information

LNCipedia transcript ID: lnc-CANX-1:10 
LNCipedia gene ID: lnc-CANX-1
Location (hg38): chr5:179671702-179676281
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4580 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1781:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 25.6572 non-coding 
CPAT coding probability 32.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CANX-1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CANX-1:10
4.1 lnc-CANX-1:10
5.0 lnc-CANX-1:10
5.1 lnc-MAML1-3:11
5.2 lnc-CANX-1:10