Transcript: lnc-CANX-1:11

Basic information

LNCipedia transcript ID: lnc-CANX-1:11 
LNCipedia gene ID: lnc-CANX-1
RefSeq ID: NR_134260
Location (hg38): chr5:179657762-179674295
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 792 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_134260.1
Alternative gene names: LOC105377763


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 14.345 non-coding 
CPAT coding probability 27.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CANX-1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-MAML1-3:2
5.1 lnc-MAML1-3:2
5.2 lnc-CANX-1:11